PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1835_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARF
Protein Properties Length: 901aa    MW: 99238 Da    PI: 6.3045
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1835_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.4e-24129230199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  RrC1835_p1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQL 223
                 99*****************************8544444..48************************************************..7888889 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  RrC1835_p1 224 LLGIRRA 230
                 ****997 PP

2Auxin_resp1187.9e-39255338183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp+rW nS+Wrs+k
  RrC1835_p1 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPTRWANSHWRSVK 338
                 79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-48114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-41122244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-20128229No hitNo description
SMARTSM010191.9E-24129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464129231IPR003340B3 DNA binding domain
PfamPF023624.9E-22129230IPR003340B3 DNA binding domain
PfamPF065078.9E-34255338IPR010525Auxin response factor
SuperFamilySSF542772.42E-7749833No hitNo description
PROSITE profilePS5174523.582758842IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MRLSTAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN  60
KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT LQPLNAQEQK DPYLPAELGV  120
PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMSMGMGM SSPLMWDRGL QSLNFQGMGV  420
NPWMQPRLDA SGMLGMQNDV YQAMAAAALQ DMRGIDPAKA AASLLQFQNP SGFSMQPPSL  480
MQPQMLQQQL SQQQQQQQQQ QQLSQQQQQS YLGVPETHQP QSQSNNLLSQ QHQVVDNHNP  540
SASSAMSQFG SASQSATLPP QSMTSLQNFS DSNGGNNNPM SPLHTLLSNF SQDESSQLLN  600
LTRTNSGAMT SSGWPSKRPA VDLSSFGNNN TQSVIEQLGQ SHSTSNVPPN AVSLPPFPGG  660
GRECSIEQEG SPSDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTTSNFN  720
NDFSTGGNLA MTTPSSCIDE PGFLQSSENL GSENQQSNTF VKVYKSGSFG RSLDITKFSS  780
YHELRSELAR MFGLEGQLED PVRSGWQLVF VDRENDVLLL GDDPWPEFVS SVWCIKILSP  840
QEVQQMGKRG LELLNSAPPS SNNNVVEKLP SSNGNCDDFG NRSDPRNLGN GIASVGGSFN  900
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591835947388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794680.0JN979468.1 Brassica rapa subsp. pekinensis auxin response factor 6 (ARF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662473.10.0PREDICTED: auxin response factor 6-like isoform X1
SwissprotQ9ZTX80.0ARFF_ARATH; Auxin response factor 6
TrEMBLA0A0D3CEU40.0A0A0D3CEU4_BRAOL; Auxin response factor
STRINGAT1G30330.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6